David Gavaghan : Publications
Journal papers
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[1]
Hierarchical Bayesian inference for ion channel screening dose−response data
RH Johnstone‚ R Bardenet‚ DJ Gavaghan and GR Mirams
In Wellcome Open Research. Vol. 1. Pages 6. 2016.
Details about Hierarchical Bayesian inference for ion channel screening dose−response data | BibTeX data for Hierarchical Bayesian inference for ion channel screening dose−response data | DOI (10.12688/wellcomeopenres.9945.1) | Link to Hierarchical Bayesian inference for ion channel screening dose−response data
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[2]
Uncertainty and variability in models of the cardiac action potential: can we build trustworthy models?
RH Johnstone‚ ET Chang‚ R Bardenet‚ TP de Boer‚ DJ Gavaghan‚ P Pathmanathan‚ RH Clayton and GR Mirams
In Journal of Molecular and Cellular Cardiology. Vol. 96. Pages 49−62. 2016.
Details about Uncertainty and variability in models of the cardiac action potential: can we build trustworthy models? | BibTeX data for Uncertainty and variability in models of the cardiac action potential: can we build trustworthy models? | DOI (10.1016/j.yjmcc.2015.11.018)
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[3]
Cardiac Tissue Slices: Preparation‚ Handling‚ and Successful Optical Mapping
K Wang‚ P Lee‚ GR Mirams‚ P Sarathchandra‚ T Borg‚ DJ Gavaghan‚ P Kohl and C Bollensdorff
In American Journal of Physiology: Heart and Circulatory Physiology. Vol. 308. Pages H1112−H1125. 2015.
Details about Cardiac Tissue Slices: Preparation‚ Handling‚ and Successful Optical Mapping | BibTeX data for Cardiac Tissue Slices: Preparation‚ Handling‚ and Successful Optical Mapping | DOI (10.1152/ajpheart.00556.2014) | Link to Cardiac Tissue Slices: Preparation‚ Handling‚ and Successful Optical Mapping
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[4]
Prediction of Thorough QT study results using action potential simulations based on ion channel screens
GR Mirams‚ MR Davies‚ SJ Brough‚ MH Bridgland−Taylor‚ Y Cui‚ DJ Gavaghan and N Abi−Gerges
In Journal of Pharmacological & Toxicological Methods. Vol. 70. No. 3. Pages 246−254. 2014.
Details about Prediction of Thorough QT study results using action potential simulations based on ion channel screens | BibTeX data for Prediction of Thorough QT study results using action potential simulations based on ion channel screens | DOI (10.1016/j.vascn.2014.07.002)
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[5]
Ten simple rules for effective computational research
James M Osborne‚ Miguel O Bernabeu‚ Maria Bruna‚ Ben Calderhead‚ Jonathan Cooper‚ Neil Dalchau‚ Sara−Jane Dunn‚ Alexander G Fletcher‚ Robin Freeman‚ Derek Groen and others
In PLoS Computational Biology. Vol. 10. No. 3. Pages e1003506. 2014.
Details about Ten simple rules for effective computational research | BibTeX data for Ten simple rules for effective computational research | DOI (10.1371/journal.pcbi.1003506)
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[6]
Variability in high−throughput ion channel screening data and consequences for cardiac safety assessment
Ryan C. Elkins‚ Mark R. Davies‚ Stephen J. Brough‚ David J. Gavaghan‚ Yi Cui‚ Najah Abi−Gerges and Gary R. Mirams
In Journal of Pharmacological and Toxicological Methods. Vol. 68. No. 1. Pages 112−122. 2013.
Details about Variability in high−throughput ion channel screening data and consequences for cardiac safety assessment | BibTeX data for Variability in high−throughput ion channel screening data and consequences for cardiac safety assessment | DOI (10.1016/j.vascn.2013.04.007)
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[7]
Evaluation of an In Silico Cardiac Safety Assay: Using Ion Channel Screening Data to Predict QT Interval Changes in the Rabbit Ventricular Wedge
Kylie A. Beattie‚ Chris Luscombe‚ Geoff Williams‚ Jordi Munoz−Muriedas‚ David J. Gavaghan‚ Yi Cui and Gary R. Mirams
In Journal of Pharmacological and Toxicological Methods. Vol. 68. No. 1. Pages 88−96. 2013.
Details about Evaluation of an In Silico Cardiac Safety Assay: Using Ion Channel Screening Data to Predict QT Interval Changes in the Rabbit Ventricular Wedge | BibTeX data for Evaluation of an In Silico Cardiac Safety Assay: Using Ion Channel Screening Data to Predict QT Interval Changes in the Rabbit Ventricular Wedge | DOI (10.1016/j.vascn.2013.04.004) | Link to Evaluation of an In Silico Cardiac Safety Assay: Using Ion Channel Screening Data to Predict QT Interval Changes in the Rabbit Ventricular Wedge
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[8]
Chaste: an open source C++ library for computational physiology and biology
Gary R Mirams‚ Christopher J Arthurs‚ Miguel O Bernabeu‚ Rafel Bordas‚ Jonathan Cooper‚ Alberto Corrias‚ Yohan Davit‚ Sara−Jane Dunn‚ Alexander G Fletcher‚ Daniel G Harvey and others
In PLoS computational biology. Vol. 9. No. 3. Pages e1002970. 2013.
Details about Chaste: an open source C++ library for computational physiology and biology | BibTeX data for Chaste: an open source C++ library for computational physiology and biology | DOI (10.1371/journal.pcbi.1002970)
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[9]
A Local Sensitivity Analysis Method for Developing Biological Models with Identifiable Parameters: Application to Cardiac Ionic Channel Modelling
A. Sher‚ K. Wang‚ A. Wathen‚ P.J. Maybank‚ G.R. Mirams‚ D. Abramson‚ D. Noble and D.J. Gavaghan
In Future Generation Computer Systems. Vol. 29. No. 2. Pages 591−598. 2013.
Details about A Local Sensitivity Analysis Method for Developing Biological Models with Identifiable Parameters: Application to Cardiac Ionic Channel Modelling | BibTeX data for A Local Sensitivity Analysis Method for Developing Biological Models with Identifiable Parameters: Application to Cardiac Ionic Channel Modelling | DOI (10.1016/j.future.2011.09.006)
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[10]
Resolving the Three−Dimensional Histology of the Heart.
M. Gibb‚ RAB. Burton‚ C. Bollensdorff‚ C. Afonso‚ T. Mansoori‚ U. Schotten‚ D. Gavaghan‚ B. Rodriguez‚ JE. Schneider‚ P. Kohl and V. Grau
In Lecture Notes in Computer Science. Pages 2−16. 2012.
Details about Resolving the Three−Dimensional Histology of the Heart. | BibTeX data for Resolving the Three−Dimensional Histology of the Heart.
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[11]
A bidomain model of the cardiac specialized conduction system of the heart.
R. Bordas‚ K. Gillow‚ D. Gavaghan‚ B. Rodriguez and D. Kay
In SIAM Journal on Applied Mathematics. 2012.
Details about A bidomain model of the cardiac specialized conduction system of the heart. | BibTeX data for A bidomain model of the cardiac specialized conduction system of the heart.
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[12]
Computational modelling of cardiac electro−physiology: explanation of the variability of results from different numerical solvers
P. Pathmanathan‚ M. Bernabeu‚ S. Niederer‚ D. Gavaghan and D. Kay
In Int. J. Numerical Methods in Biomedical Engineering. Vol. 28. No. 8. Pages 890−903. 2012.
Details about Computational modelling of cardiac electro−physiology: explanation of the variability of results from different numerical solvers | BibTeX data for Computational modelling of cardiac electro−physiology: explanation of the variability of results from different numerical solvers | DOI (10.1002/cnm.2467)
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[13]
A two−dimensional model of the colonic crypt accounting for the role of the basement membrane and pericryptal fibroblast sheath
S.−J. Dunn‚ P.L. Appleton‚ S.A. Nelson‚ I.S. Näthke‚ D.J. Gavaghan and J.M. Osborne
In Plos Computational Biology. No. 5. Pages e1002515. 2012.
Details about A two−dimensional model of the colonic crypt accounting for the role of the basement membrane and pericryptal fibroblast sheath | BibTeX data for A two−dimensional model of the colonic crypt accounting for the role of the basement membrane and pericryptal fibroblast sheath | DOI (10.1371/journal.pcbi.1002515)
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[14]
On an infrastructure to support sharing and aggregating pre− and post−publication systems biology research data
Mark Slaymaker‚ James Osborne‚ Andrew Simpson and David Gavaghan
In Systems and Synthetic Biology. Vol. 6. No. 1–2. Pages 35–49. 2012.
Details about On an infrastructure to support sharing and aggregating pre− and post−publication systems biology research data | BibTeX data for On an infrastructure to support sharing and aggregating pre− and post−publication systems biology research data | DOI (10.1007/s11693-012-9095-x)
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[15]
Modelling the role of the basement membrane in the colonic epithelium
S.−J. Dunn‚ A.G. Fletcher‚ S.J. Chapman‚ D.J. Gavaghan and J.M. Osborne
In J. Theor. Biol.. No. 298. Pages 82−91. 2012.
Details about Modelling the role of the basement membrane in the colonic epithelium | BibTeX data for Modelling the role of the basement membrane in the colonic epithelium | DOI (10.1016/j.jtbi.2011.12.013)
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[16]
Considerations for the use of cellular electrophysiology models within cardiac tissue simulations
D. Noble J. Cooper A. Corrias D. Gavaghan
In Prog Biophys Mol Biol. Vol. 107. No. 1. Pages 74−80. 2011.
Details about Considerations for the use of cellular electrophysiology models within cardiac tissue simulations | BibTeX data for Considerations for the use of cellular electrophysiology models within cardiac tissue simulations | DOI (10.1016/j.pbiomolbio.2011.06.002) | Download (pdf) of Considerations for the use of cellular electrophysiology models within cardiac tissue simulations
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[17]
Simulation of multiple ion channel block provides improved early prediction of compounds' clinical torsadogenic risk
G. R. Mirams‚ Y. Cui‚ A. Sher‚ M. Fink‚ J. Cooper‚ B. M. Heath‚ N. C. McMahon‚ D. J. Gavaghan and D. Noble
In Cardiovascular Research. Vol. 91. No. 1. Pages 53–61. 2011.
Details about Simulation of multiple ion channel block provides improved early prediction of compounds' clinical torsadogenic risk | BibTeX data for Simulation of multiple ion channel block provides improved early prediction of compounds' clinical torsadogenic risk | DOI (10.1093/cvr/cvr044) | Link to Simulation of multiple ion channel block provides improved early prediction of compounds' clinical torsadogenic risk
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[18]
A Local Sensitivity Analysis Method for Developing Biological Models with Identifiable Parameters: Application to L−type Calcium Channel Modelling
A. Sher‚ K. Wang‚ A. Wathen‚ G. Mirams‚ D. Abramson and D. Gavaghan
In 2010 IEEE Sixth International Conference on e ??: Science. Pages 176–181. 2010.
Details about A Local Sensitivity Analysis Method for Developing Biological Models with Identifiable Parameters: Application to L−type Calcium Channel Modelling | BibTeX data for A Local Sensitivity Analysis Method for Developing Biological Models with Identifiable Parameters: Application to L−type Calcium Channel Modelling | DOI (10.1109/eScience.2010.56) | Link to A Local Sensitivity Analysis Method for Developing Biological Models with Identifiable Parameters: Application to L−type Calcium Channel Modelling
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[19]
A hybrid approach to multi−scale modelling of cancer
J. M. Osborne‚ A. Walter‚ S. K. Kershaw‚ G. R. Mirams‚ A. G. Fletcher‚ P. Pathmanathan‚ D. Gavaghan‚ O. E. Jensen‚ P. K. Maini and H. M. Byrne
In Philosophical Transactions of the Royal Society A: Mathematical‚ Physical and Engineering Sciences. Vol. 368. No. 1930. Pages 5013–5028. November, 2010.
Details about A hybrid approach to multi−scale modelling of cancer | BibTeX data for A hybrid approach to multi−scale modelling of cancer | DOI (10.1098/rsta.2010.0173)
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[20]
Development of an anatomically detailed MRI−derived rabbit ventricular model and assessment of its impact on simulations of electrophysiological function
MJ Bishop‚ G. Plank‚ RAB Burton‚ JE Schneider‚ DJ Gavaghan‚ V. Grau and P. Kohl
In AMERICAN JOURNAL OF PHYSIOLOGY−HEART AND CIRCULATORY PHYSIOLOGY . Vol. 298. No. 2. February, 2010.
Details about Development of an anatomically detailed MRI−derived rabbit ventricular model and assessment of its impact on simulations of electrophysiological function | BibTeX data for Development of an anatomically detailed MRI−derived rabbit ventricular model and assessment of its impact on simulations of electrophysiological function
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[21]
Using evidence from different sources: an example using paracetamol 1000 mg plus codeine 60 mg
L. A. Smith‚ R. A. Moore‚ H. J. McQuay and DJ Gavaghan
In BMC Medical Research Methodology − Latest Articles. Vol. 1. 2010.
Details about Using evidence from different sources: an example using paracetamol 1000 mg plus codeine 60 mg | BibTeX data for Using evidence from different sources: an example using paracetamol 1000 mg plus codeine 60 mg
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[22]
Note on the Effect of the Choice of Weak Form on GMRES Convergence for Incompressible Nonlinear Elasticity Problems
P. Pathmanathan‚ JP Whiteley‚ SJ Chapman and DJ Gavaghan
In JOURNAL OF APPLIED MECHANICS−TRANSACTIONS OF THE ASME . Vol. 77. No. 3. May, 2010.
Details about Note on the Effect of the Choice of Weak Form on GMRES Convergence for Incompressible Nonlinear Elasticity Problems | BibTeX data for Note on the Effect of the Choice of Weak Form on GMRES Convergence for Incompressible Nonlinear Elasticity Problems
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[23]
Interactions Between a Voltage Sensor and a Toxin via Multiscale Simulations
CL Wee‚ DJ Gavaghan and MSP Sansom
In BIOPHYSICAL JOURNAL . Vol. 98. No. 8. Pages 1558–1565. 2010.
Details about Interactions Between a Voltage Sensor and a Toxin via Multiscale Simulations | BibTeX data for Interactions Between a Voltage Sensor and a Toxin via Multiscale Simulations
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[24]
numerical guide to the solution of the bidomain equations of cardiac electrophysiology
P. Pathmanathan‚ MO Bernabeu‚ R. Bordas‚ J. Cooper‚ A. Garny‚ JM Pitt−Francis‚ JP Whiteley and DJ Gavaghan
In PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY . Vol. 102. No. 2. Pages 136–155. 2010.
Details about numerical guide to the solution of the bidomain equations of cardiac electrophysiology | BibTeX data for numerical guide to the solution of the bidomain equations of cardiac electrophysiology
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[25]
Systems Biology Approach to Drug Development: Application to Toxicity Assessment of Cardiac Drugs
B. Rodriguez‚ K. Burrage‚ DJ Gavaghan‚ V. Grau‚ P. Kohl and D. Noble
In CLINICAL PHARMACOLOGY & THERAPEUTICS . Vol. 88. No. 1. Pages 130–134. July, 2010.
Details about Systems Biology Approach to Drug Development: Application to Toxicity Assessment of Cardiac Drugs | BibTeX data for Systems Biology Approach to Drug Development: Application to Toxicity Assessment of Cardiac Drugs
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[26]
POSTERIORI ERROR ANALYSIS FOR THE USE OF LOOKUP TABLES IN CARDIAC ELECTROPHYSIOLOGY SIMULATIONS
J. Cooper‚ JP Whiteley and DJ Gavaghan
In SIAM JOURNAL ON SCIENTIFIC COMPUTING . Vol. 32. No. 4. Pages 2167–2189. 2010.
Details about POSTERIORI ERROR ANALYSIS FOR THE USE OF LOOKUP TABLES IN CARDIAC ELECTROPHYSIOLOGY SIMULATIONS | BibTeX data for POSTERIORI ERROR ANALYSIS FOR THE USE OF LOOKUP TABLES IN CARDIAC ELECTROPHYSIOLOGY SIMULATIONS
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[27]
Integrated approach for the study of anatomical variability in the cardiac Purkinje system: From high resolution MRI to electrophysiology simulation
R. Bordas‚ V. Grau‚ R. B. Burton‚ P. Hales‚ J. E. Schneider‚ DJ Gavaghan‚ P. Kohl and B. Rodriguez
In Conf Proc IEEE Eng Med Biol Soc . Vol. 1. Pages 6793–6. 2010.
Details about Integrated approach for the study of anatomical variability in the cardiac Purkinje system: From high resolution MRI to electrophysiology simulation | BibTeX data for Integrated approach for the study of anatomical variability in the cardiac Purkinje system: From high resolution MRI to electrophysiology simulation
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[28]
global sensitivity tool for cardiac cell modeling: Application to ionic current balance and hypertrophic signaling
Anna A. Sher‚ Michael T. Cooling‚ Blair Bethwaite‚ Jefferson Tan‚ Tom Peachey‚ Colin Enticott‚ Slavisa Garic‚ David J. Gavaghan‚ Denis Noble‚ David Abramson and Edmund J. Crampin
In Conf Proc IEEE Eng Med Biol Soc . Vol. 1. Pages 1498–502. 2010.
Details about global sensitivity tool for cardiac cell modeling: Application to ionic current balance and hypertrophic signaling | BibTeX data for global sensitivity tool for cardiac cell modeling: Application to ionic current balance and hypertrophic signaling
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[29]
CARDIAC ELECTROMECHANICS: THE EFFECT OF CONTRACTION MODEL ON THE MATHEMATICAL PROBLEM AND ACCURACY OF THE NUMERICAL SCHEME
P. Pathmanathan‚ SJ Chapman‚ DJ Gavaghan and JP Whiteley
In QUARTERLY JOURNAL OF MECHANICS AND APPLIED MATHEMATICS . Vol. 63. No. 3. Pages 375–399. August, 2010.
Details about CARDIAC ELECTROMECHANICS: THE EFFECT OF CONTRACTION MODEL ON THE MATHEMATICAL PROBLEM AND ACCURACY OF THE NUMERICAL SCHEME | BibTeX data for CARDIAC ELECTROMECHANICS: THE EFFECT OF CONTRACTION MODEL ON THE MATHEMATICAL PROBLEM AND ACCURACY OF THE NUMERICAL SCHEME
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[30]
Multistability property in cardiac ionic models of mammalian and human ventricular cells
E. Surovyatkina‚ D. Noble‚ DJ Gavaghan and A. Sher
In PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY . Vol. 103. No. 1. Pages 131–141. September, 2010.
Details about Multistability property in cardiac ionic models of mammalian and human ventricular cells | BibTeX data for Multistability property in cardiac ionic models of mammalian and human ventricular cells
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[31]
A numerical guide to the solution of the bidomain equations of cardiac electrophysiology
Pras Pathmanathan‚ Miguel O Bernabeu‚ Rafel Bordas‚ Jonathan Cooper‚ Alan Garny‚ Joe M Pitt−Francis‚ Jonathan P Whiteley and David J Gavaghan
In Progress in biophysics and molecular biology. Vol. 102. No. 2−3. Pages 136–155. 2010.
Details about A numerical guide to the solution of the bidomain equations of cardiac electrophysiology | BibTeX data for A numerical guide to the solution of the bidomain equations of cardiac electrophysiology | DOI (10.1016/j.pbiomolbio.2010.05.006)
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[32]
A Note on the Effect of the Choice of Weak Form on GMRES Convergence for Incompressible Nonlinear Elasticity Problems
P. Pathmanathan‚ J.P. Whiteley‚ S.J. Chapman and D.J. Gavaghan
In Journal of Applied Mechanics. Vol. 77. Pages 034501. 2010.
Details about A Note on the Effect of the Choice of Weak Form on GMRES Convergence for Incompressible Nonlinear Elasticity Problems | BibTeX data for A Note on the Effect of the Choice of Weak Form on GMRES Convergence for Incompressible Nonlinear Elasticity Problems | DOI (10.1115/1.4000414)
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[33]
Chaste: a test−driven approach to software development for biological modelling
Joe Pitt−Francis‚ Pras Pathmanathan‚ Miguel O Bernabeu‚ Rafel Bordas‚ Jonathan Cooper‚ Alexander G Fletcher‚ Gary R Mirams‚ Philip Murray‚ James M Osborne‚ Alex Walter and others
In Computer Physics Communications. Vol. 180. No. 12. Pages 2452–2471. 2009.
Details about Chaste: a test−driven approach to software development for biological modelling | BibTeX data for Chaste: a test−driven approach to software development for biological modelling | DOI (10.1016/j.cpc.2009.07.019)
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[34]
Inverse membrane problems in elasticity
P. Pathmanathan‚ SJ Chapman and DJ Gavaghan
In QUARTERLY JOURNAL OF MECHANICS AND APPLIED MATHEMATICS . Vol. 62. No. 1. Pages 67–87. February, 2009.
Details about Inverse membrane problems in elasticity | BibTeX data for Inverse membrane problems in elasticity | DOI (10.1093/qjmam/hbn026) | Link to Inverse membrane problems in elasticity
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[35]
virtual physiological human: tools and applications I
DJ Gavaghan‚ PV Coveney and P. Kohl
In PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A−MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES . Vol. 367. No. 1895. Pages 1817–1821. 2009.
Details about virtual physiological human: tools and applications I | BibTeX data for virtual physiological human: tools and applications I | DOI (10.1098/rsta.2009.0070) | Link to virtual physiological human: tools and applications I
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[36]
Relationship between structural changes and hyperpolarized gas magnetic resonance imaging in chronic obstructive pulmonary disease using computational simulations with realistic alveolar geometry
M. Plotkowiak‚ K. Burrowes‚ J. Wolber‚ C. Buckley‚ R. Davies‚ F. Gleeson‚ DJ Gavaghan and V. Grau
In PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A−MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES . Vol. 367. No. 1896. Pages 2347–2369. 2009.
Details about Relationship between structural changes and hyperpolarized gas magnetic resonance imaging in chronic obstructive pulmonary disease using computational simulations with realistic alveolar geometry | BibTeX data for Relationship between structural changes and hyperpolarized gas magnetic resonance imaging in chronic obstructive pulmonary disease using computational simulations with realistic alveolar geometry
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[37]
virtual physiological human: tools and applications II INTRODUCTION
P. Kohl‚ PV Coveney and DJ Gavaghan
In PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A−MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES . Vol. 367. No. 1896. Pages 2121–2123. 2009.
Details about virtual physiological human: tools and applications II INTRODUCTION | BibTeX data for virtual physiological human: tools and applications II INTRODUCTION | DOI (10.1098/rsta.2009.0071) | Link to virtual physiological human: tools and applications II INTRODUCTION
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[38]
Generation of histo−anatomically representative models of the individual heart: tools and application
G. Plank‚ RAB Burton‚ P. Hales‚ M. Bishop‚ T. Mansoori‚ MO Bernabeu‚ A. Garny‚ AJ Prassl‚ C. Bollensdorff‚ F. Mason‚ F. Mahmood‚ B. Rodriguez‚ V. Grau‚ JE Schneider‚ DJ Gavaghan and P. Kohl
In PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A−MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES . Vol. 367. No. 1896. Pages 2257–2292. 2009.
Details about Generation of histo−anatomically representative models of the individual heart: tools and application | BibTeX data for Generation of histo−anatomically representative models of the individual heart: tools and application
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[39]
An investigation into the role of the optical detection set−up in the recording of cardiac optical mapping signals: A Monte Carlo simulation study
MJ Bishop‚ G. Bub‚ A. Garny‚ DJ Gavaghan and B. Rodriguez
In PHYSICA D−NONLINEAR PHENOMENA . Vol. 238. No. 11. Pages 1008–1018. 2009.
Details about An investigation into the role of the optical detection set−up in the recording of cardiac optical mapping signals: A Monte Carlo simulation study | BibTeX data for An investigation into the role of the optical detection set−up in the recording of cardiac optical mapping signals: A Monte Carlo simulation study
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[40]
comparison of numerical methods used for finite element modelling of soft tissue deformation
P. Pathmanathan‚ DJ Gavaghan and J. Whiteley
In The Journal of Strain Analysis for Engineering Design. Vol. 44. No. 5. Pages 391–406. July, 2009.
Details about comparison of numerical methods used for finite element modelling of soft tissue deformation | BibTeX data for comparison of numerical methods used for finite element modelling of soft tissue deformation
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[41]
Designer based Fourier transformed voltammetry: A multi−frequency‚ variable amplitude‚ sinusoidal waveform
YJ Tan‚ GP Stevenson‚ RE Baker‚ D. Elton‚ K. Gillow‚ J. Zhang‚ AM Bond and DJ Gavaghan
In JOURNAL OF ELECTROANALYTICAL CHEMISTRY . Vol. 634. No. 1. Pages 11–21. 2009.
Details about Designer based Fourier transformed voltammetry: A multi−frequency‚ variable amplitude‚ sinusoidal waveform | BibTeX data for Designer based Fourier transformed voltammetry: A multi−frequency‚ variable amplitude‚ sinusoidal waveform
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[42]
L−TYPE CALCIUM CHANNELS AND CALCIUM REGULATION IN VENTRICULAR MYOCYTES: IN SILICO STUDIES
A. Sher‚ G. Mirams‚ DJ Gavaghan‚ D. Noble and M. Fink
In JOURNAL OF PHYSIOLOGICAL SCIENCES . Vol. 59. Pages 259–259. 2009.
Details about L−TYPE CALCIUM CHANNELS AND CALCIUM REGULATION IN VENTRICULAR MYOCYTES: IN SILICO STUDIES | BibTeX data for L−TYPE CALCIUM CHANNELS AND CALCIUM REGULATION IN VENTRICULAR MYOCYTES: IN SILICO STUDIES
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[43]
Assessing the relative influence of branching structure on pulmonary blood flow with computational models
Tom Doel‚ Kelly S Burrowes‚ Jonathan P Whiteley‚ Vicente Grau and David J Gavaghan
In American Journal of Respiratory and Critical Care Medicine. Vol. 179. Pages A6027. 2009.
Details about Assessing the relative influence of branching structure on pulmonary blood flow with computational models | BibTeX data for Assessing the relative influence of branching structure on pulmonary blood flow with computational models
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[44]
An integrative computational model for intestinal tissue renewal
Van Leeuwen‚ Ingeborg MM‚ GR Mirams‚ Alex Walter‚ A Fletcher‚ P Murray‚ J Osborne‚ S Varma‚ SJ Young‚ J Cooper‚ B Doyle and others
In Cell proliferation. Vol. 42. No. 5. Pages 617–636. 2009.
Details about An integrative computational model for intestinal tissue renewal | BibTeX data for An integrative computational model for intestinal tissue renewal | DOI (10.1111/j.1365-2184.2009.00627.x)
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[45]
Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library
M.O. Bernabeu‚ R. Bordas‚ P. Pathmanathan‚ J. Pitt−Francis‚ J. Cooper‚ A. Garny‚ D.J. Gavaghan‚ B. Rodriguez‚ J.A. Southern and J.P. Whiteley
In Phil Trans Roy Soc (A). Vol. 367. No. 1895. Pages 1907−1930. May, 2009.
Details about Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library | BibTeX data for Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library | DOI (10.1098/rsta.2008.0309)
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[46]
role of the Na+/Ca2+ exchangers in Ca2+ dynamics in ventricular myocytes
AA Sher‚ PJ Noble‚ R. Hinch‚ DJ Gavaghan and D. Noble
In PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY . Vol. 96. No. 1. Pages 377–398. 2008.
Details about role of the Na+/Ca2+ exchangers in Ca2+ dynamics in ventricular myocytes | BibTeX data for role of the Na+/Ca2+ exchangers in Ca2+ dynamics in ventricular myocytes
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[47]
Lipid bilayer deformation and the free energy of interaction of a Kv channel gating−modifier toxin
CL Wee‚ DJ Gavaghan and MSP Sansom
In Biophysical Journal. Vol. 95. No. 8. Pages 3816–3826. 2008.
Details about Lipid bilayer deformation and the free energy of interaction of a Kv channel gating−modifier toxin | BibTeX data for Lipid bilayer deformation and the free energy of interaction of a Kv channel gating−modifier toxin
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[48]
role of transmural ventricular heterogeneities in cardiac vulnerability to electric shocks
T. Maharaj‚ R. Blake‚ N. Trayanova‚ DJ Gavaghan and B. Rodriguez
In PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY . Vol. 96. No. 1. Pages 321–338. 2008.
Details about role of transmural ventricular heterogeneities in cardiac vulnerability to electric shocks | BibTeX data for role of transmural ventricular heterogeneities in cardiac vulnerability to electric shocks
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[49]
Multi−scale computational modelling in biology and physiology
J. Southern‚ J. Pitt−Francis‚ J. Whiteley‚ D. Stokeley‚ H. Kobashi‚ R. Nobes‚ Y. Kadooka and DJ Gavaghan
In PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY . Vol. 96. No. 1. Pages 60–89. 2008.
Details about Multi−scale computational modelling in biology and physiology | BibTeX data for Multi−scale computational modelling in biology and physiology
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[50]
interaction of phospholipase A2 with a phospholipid bilayer: Coarse−grained molecular dynamics simulations
CL Wee‚ K. Balali−Mood‚ DJ Gavaghan and MSP Sansom
In BIOPHYSICAL JOURNAL . Vol. 95. No. 4. Pages 1649–1657. 2008.
Details about interaction of phospholipase A2 with a phospholipid bilayer: Coarse−grained molecular dynamics simulations | BibTeX data for interaction of phospholipase A2 with a phospholipid bilayer: Coarse−grained molecular dynamics simulations
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[51]
Predicting Tumor Location by Modeling the Deformation of the Breast
P. Pathmanathan‚ DJ Gavaghan‚ JP Whiteley‚ SJ Chapman and JM Brady
In IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING . Vol. 55. No. 10. Pages 2471–2480. October, 2008.
Details about Predicting Tumor Location by Modeling the Deformation of the Breast | BibTeX data for Predicting Tumor Location by Modeling the Deformation of the Breast
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[52]
Predicting Tumor Location by Modeling the Deformation of the Breast
JM Pathmanathan P.and Gavaghan DJand Whiteley JPand Chapman SJand Brady
In IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING . Vol. 55. No. 10. Pages 2471–2480. October, 2008.
Details about Predicting Tumor Location by Modeling the Deformation of the Breast | BibTeX data for Predicting Tumor Location by Modeling the Deformation of the Breast
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[53]
Chaste: using agile programming techniques to develop computational biology software
Joe Pitt−Francis‚ Miguel O Bernabeu‚ Jonathan Cooper‚ Alan Garny‚ Lee Momtahan‚ James Osborne‚ Pras Pathmanathan‚ Blanca Rodriguez‚ Jonathan P Whiteley and David J Gavaghan
In Philosophical Transactions of the Royal Society A: Mathematical‚ Physical and Engineering Sciences. Vol. 366. No. 1878. Pages 3111–3136. 2008.
Details about Chaste: using agile programming techniques to develop computational biology software | BibTeX data for Chaste: using agile programming techniques to develop computational biology software | DOI (10.1098/rsta.2008.0096)
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[54]
Synchronization between arterial blood pressure and cerebral oxyhaemoglobin concentration investigated by wavelet cross−correlation
AB Rowley‚ SJ Payne‚ I. Tachtsidis‚ MJ Ebden‚ JP Whiteley‚ DJ Gavaghan‚ L. Tarassenko‚ M. Smith‚ CE Elwell and DT Delpy
In PHYSIOLOGICAL MEASUREMENT . Vol. 28. No. 2. Pages 161–173. February, 2007.
Details about Synchronization between arterial blood pressure and cerebral oxyhaemoglobin concentration investigated by wavelet cross−correlation | BibTeX data for Synchronization between arterial blood pressure and cerebral oxyhaemoglobin concentration investigated by wavelet cross−correlation
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[55]
Non−linear modelling of breast tissue
JP Whiteley‚ DJ Gavaghan‚ SJ Chapman and JM Brady
In MATHEMATICAL MEDICINE AND BIOLOGY−A JOURNAL OF THE IMA . Vol. 24. No. 3. Pages 327–345. September, 2007.
Details about Non−linear modelling of breast tissue | BibTeX data for Non−linear modelling of breast tissue
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[56]
role of photon scattering in optical signal distortion during arrhythmia and defibrillation
MJ Bishop‚ B. Rodriguez‚ F. Qu‚ IR Efimov‚ DJ Gavaghan and NA Trayanova
In BIOPHYSICAL JOURNAL . Vol. 93. No. 10. Pages 3714–3726. November, 2007.
Details about role of photon scattering in optical signal distortion during arrhythmia and defibrillation | BibTeX data for role of photon scattering in optical signal distortion during arrhythmia and defibrillation
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[57]
SGTx1‚ a Kv channel gating−modifier toxin‚ binds to the interfacial region of lipid bilayers
CL Wee‚ D. Bemporad‚ ZA Sands‚ DJ Gavaghan and MSP Sansom
In Biophysical Journal. Vol. 92. No. 1. January, 2007.
Details about SGTx1‚ a Kv channel gating−modifier toxin‚ binds to the interfacial region of lipid bilayers | BibTeX data for SGTx1‚ a Kv channel gating−modifier toxin‚ binds to the interfacial region of lipid bilayers
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[58]
Metabolic changes during carcinogenesis: Potential impact on invasiveness
K. Smallbone‚ RA Gatenby‚ RJ Gillies‚ PK Maini and DJ Gavaghan
In JOURNAL OF THEORETICAL BIOLOGY . Vol. 244. No. 4. Pages 703–713. 2007.
Details about Metabolic changes during carcinogenesis: Potential impact on invasiveness | BibTeX data for Metabolic changes during carcinogenesis: Potential impact on invasiveness
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[59]
Integrative Biology − the challenges of developing a collaborative research environment for heart and cancer modelling
S. Lloyd‚ DJ Gavaghan‚ A. Simpson‚ M. Mascord‚ C. Seneurine‚ G. Williams‚ J. Pitt−Francis‚ D. Boyd‚ Randal D. Mac‚ L. Sastry‚ S. Nagella‚ K. Weeks‚ R. Fowler‚ D. Hanlon‚ J. Handley and Fabritiis G. de
In FUTURE GENERATION COMPUTER SYSTEMS−THE INTERNATIONAL JOURNAL OF GRID COMPUTING THEORY METHODS AND APPLICATIONS . Vol. 23. No. 3. Pages 457–465. March, 2007.
Details about Integrative Biology − the challenges of developing a collaborative research environment for heart and cancer modelling | BibTeX data for Integrative Biology − the challenges of developing a collaborative research environment for heart and cancer modelling
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[60]
Quiescence as a mechanism for cyclical hypoxia and acidosis
K. Smallbone‚ DJ Gavaghan‚ PK Maini and JM Brady
In JOURNAL OF MATHEMATICAL BIOLOGY . Vol. 55. No. 5. Pages 767–779. November, 2007.
Details about Quiescence as a mechanism for cyclical hypoxia and acidosis | BibTeX data for Quiescence as a mechanism for cyclical hypoxia and acidosis
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[61]
Conformational dynamics of a lipid−interacting protein: MD simulations of saposin B
D. Stokeley‚ D. Bemporad‚ DJ Gavaghan and MSP Sansom
In BIOCHEMISTRY . Vol. 46. No. 47. Pages 13573–13580. 2007.
Details about Conformational dynamics of a lipid−interacting protein: MD simulations of saposin B | BibTeX data for Conformational dynamics of a lipid−interacting protein: MD simulations of saposin B
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[62]
Finite element solution of a membrane covered electrode problem
K. Gillow‚ DJ Gavaghan and E. Suli
In Journal of Electroanalytical Chemistry. Vol. 587. No. 1. Pages 18–24. 2006.
Details about Finite element solution of a membrane covered electrode problem | BibTeX data for Finite element solution of a membrane covered electrode problem | DOI (10.1016/j.jelechem.2005.09.029) | Link to Finite element solution of a membrane covered electrode problem
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[63]
Numerical simulation of the effects of experimental error on the higher harmonic components of Fourier transformed AC voltammograms
DJ Gavaghan and AM Bond
In Electroanalysis. Vol. 18. No. 4. Pages 333–344. February, 2006.
Details about Numerical simulation of the effects of experimental error on the higher harmonic components of Fourier transformed AC voltammograms | BibTeX data for Numerical simulation of the effects of experimental error on the higher harmonic components of Fourier transformed AC voltammograms
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[64]
Mathematical models in physiology
DJ Gavaghan‚ A. Garny‚ PK Maini and P. Kohl
In PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A−MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES . Vol. 364. No. 1842. Pages 1099–1106. 2006.
Details about Mathematical models in physiology | BibTeX data for Mathematical models in physiology
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[65]
Achieving coexistence − Comment on “Modelling rain forest diversity: The role of competition” by Bampfylde et al. (2005)
CJ Bampfylde‚ ND Brown‚ DJ Gavaghan and PK Maini
In Ecological Modelling. Vol. 195. No. 3. Pages 407–408. 2006.
Details about Achieving coexistence − Comment on “Modelling rain forest diversity: The role of competition” by Bampfylde et al. (2005) | BibTeX data for Achieving coexistence − Comment on “Modelling rain forest diversity: The role of competition” by Bampfylde et al. (2005) | DOI (10.1016/j.ecolmodel.2006.01.001) | Link to Achieving coexistence − Comment on “Modelling rain forest diversity: The role of competition” by Bampfylde et al. (2005)
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[66]
Inference of intramural wavefront orientation from optical recordings in realistic whole−heart models
MJ Bishop‚ B. Rodriguez‚ N. Trayanova and DJ Gavaghan
In Biophysical Journal. Vol. 91. No. 10. Pages 3957–3958. November, 2006.
Details about Inference of intramural wavefront orientation from optical recordings in realistic whole−heart models | BibTeX data for Inference of intramural wavefront orientation from optical recordings in realistic whole−heart models | DOI (10.1529/biophysj.106.092544) | Link to Inference of intramural wavefront orientation from optical recordings in realistic whole−heart models
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[67]
Biomathematical modelling II − Preface
P. Kohl‚ A. Garny‚ PK Maini and DJ Gavaghan
In PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A−MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES . Vol. 364. No. 1843. Pages 1331–1331. 2006.
Details about Biomathematical modelling II − Preface | BibTeX data for Biomathematical modelling II − Preface | DOI (10.1098/rsta.2006.1787) | Link to Biomathematical modelling II − Preface
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[68]
Computation of currents at microelectrodes using hp−DGFEM
K. Gillow‚ DJ Gavaghan and E. Suli
In Journal of Electroanalytical Chemistry. Vol. 587. No. 1. Pages 1–17. 2006.
Details about Computation of currents at microelectrodes using hp−DGFEM | BibTeX data for Computation of currents at microelectrodes using hp−DGFEM
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[69]
Synthesis of voltage−sensitive optical signals: Application to panoramic optical mapping
MJ Bishop‚ B. Rodriguez‚ J. Eason‚ JP Whiteley‚ N. Trayanova and DJ Gavaghan
In BIOPHYSICAL JOURNAL . Vol. 90. No. 8. Pages 2938–2945. April, 2006.
Details about Synthesis of voltage−sensitive optical signals: Application to panoramic optical mapping | BibTeX data for Synthesis of voltage−sensitive optical signals: Application to panoramic optical mapping
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[70]
Post−genomic science: cross−disciplinary and large−scale collaborative research and its organizational and technological challenges for the scientific research process
E. Welsh‚ M. Jirotka and DJ Gavaghan
In PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A−MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES . Vol. 364. No. 1843. Pages 1533–1549. 2006.
Details about Post−genomic science: cross−disciplinary and large−scale collaborative research and its organizational and technological challenges for the scientific research process | BibTeX data for Post−genomic science: cross−disciplinary and large−scale collaborative research and its organizational and technological challenges for the scientific research process
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[71]
Biomathematical modelling II − Preface
P. Kohl‚ A. Garny‚ PK Maini and DJ Gavaghan
In PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A−MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES . Vol. 364. No. 1843. Pages 1331–1331. 2006.
Details about Biomathematical modelling II − Preface | BibTeX data for Biomathematical modelling II − Preface | DOI (10.1098/rsta.2006.1787) | Link to Biomathematical modelling II − Preface
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[72]
Development of a functional magnetic resonance imaging simulator for modeling realistic rigid−body motion artifacts
I. Drobnjak‚ DJ Gavaghan‚ E. Suli‚ J. Pitt−Francis and M. Jenkinson
In MAGNETIC RESONANCE IN MEDICINE . Vol. 56. No. 2. Pages 364–380. August, 2006.
Details about Development of a functional magnetic resonance imaging simulator for modeling realistic rigid−body motion artifacts | BibTeX data for Development of a functional magnetic resonance imaging simulator for modeling realistic rigid−body motion artifacts
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[73]
Adaptive finite element methods in electrochemistry
DJ Gavaghan‚ K. Gillow and E. Suli
In Langmuir. Vol. 22. No. 25. Pages 10666–10682. 2006.
Details about Adaptive finite element methods in electrochemistry | BibTeX data for Adaptive finite element methods in electrochemistry
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[74]
Three−dimensional models of individual cardiac histoanatomy: Tools and challenges
RAB Burton‚ G. Plank‚ JE Schneider‚ V. Grau‚ H. Ahammer‚ SL Keeling‚ J. Lee‚ NP Smith‚ DJ Gavaghan‚ N. Trayanova and P. Kohl
In Annals of the New York Academy of Sciences: ANNALS OF THE NEW YORK ACADEMY OF SCIENCES . Vol. 1080. Pages 301–319. 2006.
Details about Three−dimensional models of individual cardiac histoanatomy: Tools and challenges | BibTeX data for Three−dimensional models of individual cardiac histoanatomy: Tools and challenges
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[75]
Three−dimensional models of individual cardiac histoanatomy: Tools and challenges
RAB Burton‚ G. Plank‚ JE Schneider‚ V. Grau‚ H. Ahammer‚ SL Keeling‚ J. Lee‚ NP Smith‚ DJ Gavaghan‚ N. Trayanova and P. Kohl
In Annals of the New York Academy of Sciences: ANNALS OF THE NEW YORK ACADEMY OF SCIENCES . Vol. 1080. Pages 301–319. 2006.
Details about Three−dimensional models of individual cardiac histoanatomy: Tools and challenges | BibTeX data for Three−dimensional models of individual cardiac histoanatomy: Tools and challenges
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[76]
Vulnerability to electric shocks in the regionally−ischemic ventricles
Blanca Rodriguez‚ Brock Tice‚ Robert Blake‚ David Gavaghan and Natalia Trayanova
In Conf Proc IEEE Eng Med Biol Soc . Vol. 1. Pages 2280–3. 2006.
Details about Vulnerability to electric shocks in the regionally−ischemic ventricles | BibTeX data for Vulnerability to electric shocks in the regionally−ischemic ventricles
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[77]
Transmural electrophysiological heterogeneities in action potential duration increase the upper limit of vulnerability
T. Maharaj‚ B. Rodriguez‚ R. Blake‚ N. A. Trayanova and D. J. Gavaghan
In Conf Proc IEEE Eng Med Biol Soc . Vol. 1. Pages 4043–6. 2006.
Details about Transmural electrophysiological heterogeneities in action potential duration increase the upper limit of vulnerability | BibTeX data for Transmural electrophysiological heterogeneities in action potential duration increase the upper limit of vulnerability
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[78]
Modulation of shock−end virtual electrode polarisation as a direct result of 3D fluorescent photon scattering
M. J. Bishop‚ B. Rodriguez‚ N. Trayanova and D. J. Gavaghan
In Conf Proc IEEE Eng Med Biol Soc . Vol. 1. Pages 1556–9. 2006.
Details about Modulation of shock−end virtual electrode polarisation as a direct result of 3D fluorescent photon scattering | BibTeX data for Modulation of shock−end virtual electrode polarisation as a direct result of 3D fluorescent photon scattering
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[79]
role of acidity in solid tumour growth and invasion
K. Smallbone‚ DJ Gavaghan‚ RA Gatenby and PK Maini
In Journal of theoretical biology. Vol. 235. No. 4. Pages 476–484. 2005.
Details about role of acidity in solid tumour growth and invasion | BibTeX data for role of acidity in solid tumour growth and invasion
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[80]
Towards a Grid infrastructure to support integrative approaches to biological research
DJ Gavaghan‚ AC Simpson‚ S. Lloyd‚ Randal DF Mac and DRS Boyd
In PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A−MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES . Vol. 363. No. 1833. Pages 1829–1841. 2005.
Details about Towards a Grid infrastructure to support integrative approaches to biological research | BibTeX data for Towards a Grid infrastructure to support integrative approaches to biological research
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[81]
Fourier transformed large amplitude square−wave voltammetry as an alternative to impedance spectroscopy: Evaluation of resistance‚ capacitance and electrode kinetic effects via an heuristic approach
AA Sher‚ AM Bond‚ DJ Gavaghan‚ K. Gillow‚ NW Duffy‚ SX Guo and J. Zhang
In Electroanalysis. Vol. 17. No. 15. Pages 1450–1462. August, 2005.
Details about Fourier transformed large amplitude square−wave voltammetry as an alternative to impedance spectroscopy: Evaluation of resistance‚ capacitance and electrode kinetic effects via an heuristic approach | BibTeX data for Fourier transformed large amplitude square−wave voltammetry as an alternative to impedance spectroscopy: Evaluation of resistance‚ capacitance and electrode kinetic effects via an heuristic approach
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[82]
Modelling rain forest diversity: The role of competition
CJ Bampfylde‚ ND Brown‚ DJ Gavaghan and PK Maini
In Ecological Modelling. Vol. 188. No. 2. Pages 253–278. 2005.
Details about Modelling rain forest diversity: The role of competition | BibTeX data for Modelling rain forest diversity: The role of competition
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[83]
Resistance‚ capacitance‚ and electrode kinetic effects in Fourier−transformed large−amplitude sinusoidal voltammetry: Emergence of powerful and intuitively obvious tools for recognition of patterns of behavior
AA Sher‚ AM Bond‚ DJ Gavaghan‚ K. Harriman‚ SW Feldberg‚ MW Duffy‚ SX Guo and J. Zhang
In Analytical chemistry. Vol. 76. No. 21. Pages 6214–6228. 2004.
Details about Resistance‚ capacitance‚ and electrode kinetic effects in Fourier−transformed large−amplitude sinusoidal voltammetry: Emergence of powerful and intuitively obvious tools for recognition of patterns of behavior | BibTeX data for Resistance‚ capacitance‚ and electrode kinetic effects in Fourier−transformed large−amplitude sinusoidal voltammetry: Emergence of powerful and intuitively obvious tools for recognition of patterns of behavior
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[84]
Time dependent EC '‚ ECE and EC2E mechanisms at microdisc electrodes: simulations using adaptive finite element methods
K. Harriman‚ DJ Gavaghan and E. Suli
In Journal of Electroanalytical Chemistry. Vol. 569. No. 1. Pages 35–46. 2004.
Details about Time dependent EC '‚ ECE and EC2E mechanisms at microdisc electrodes: simulations using adaptive finite element methods | BibTeX data for Time dependent EC '‚ ECE and EC2E mechanisms at microdisc electrodes: simulations using adaptive finite element methods
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[85]
Simulation of linear sweep voltammetry using an adaptive finite element algorithm
K. Harriman‚ DJ Gavaghan and E. Suli
In Journal of Electroanalytical Chemistry. Vol. 573. No. 1. Pages 169–174. 2004.
Details about Simulation of linear sweep voltammetry using an adaptive finite element algorithm | BibTeX data for Simulation of linear sweep voltammetry using an adaptive finite element algorithm | DOI (10.1016/j.jelechem.2004.05.033) | Link to Simulation of linear sweep voltammetry using an adaptive finite element algorithm
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[86]
tidal ventilation model for oxygenation in respiratory failure
JP Whiteley‚ AD Farmery‚ DJ Gavaghan and CEW Hahn
In RESPIRATORY PHYSIOLOGY & NEUROBIOLOGY . Vol. 136. No. 1. Pages 77–88. 2003.
Details about tidal ventilation model for oxygenation in respiratory failure | BibTeX data for tidal ventilation model for oxygenation in respiratory failure
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[87]
Mathematical modelling of pulmonary gas transport
JP Whiteley‚ DJ Gavaghan and CEW Hahn
In JOURNAL OF MATHEMATICAL BIOLOGY . Vol. 47. No. 1. Pages 79–99. July, 2003.
Details about Mathematical modelling of pulmonary gas transport | BibTeX data for Mathematical modelling of pulmonary gas transport
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[88]
effect of diffusion in the respiratory tree on the alveolar amplitude response technique (AART)
JP Whiteley‚ DJ Gavaghan and CEW Hahn
In RESPIRATORY PHYSIOLOGY & NEUROBIOLOGY . Vol. 137. No. 1. Pages 81–96. 2003.
Details about effect of diffusion in the respiratory tree on the alveolar amplitude response technique (AART) | BibTeX data for effect of diffusion in the respiratory tree on the alveolar amplitude response technique (AART)
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[89]
Efficient computations of gas transport in the respiratory tree
JP Whiteley and DJ Gavaghan
In MATHEMATICAL MEDICINE AND BIOLOGY−A JOURNAL OF THE IMA . Vol. 20. No. 1. Pages 91–104. March, 2003.
Details about Efficient computations of gas transport in the respiratory tree | BibTeX data for Efficient computations of gas transport in the respiratory tree
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[90]
Periodic breathing induced by arterial oxygen partial pressure oscillations
JP Whiteley‚ DJ Gavaghan and CEW Hahn
In MATHEMATICAL MEDICINE AND BIOLOGY−A JOURNAL OF THE IMA . Vol. 20. No. 2. Pages 205–224. June, 2003.
Details about Periodic breathing induced by arterial oxygen partial pressure oscillations | BibTeX data for Periodic breathing induced by arterial oxygen partial pressure oscillations
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[91]
Adaptive finite element simulation of chronoamperometry at microdisc electrodes
K. Harriman‚ DJ Gavaghan and E. Suli
In Electrochemistry Communications. Vol. 5. No. 7. Pages 519–529. July, 2003.
Details about Adaptive finite element simulation of chronoamperometry at microdisc electrodes | BibTeX data for Adaptive finite element simulation of chronoamperometry at microdisc electrodes
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[92]
Models for pattern formation in somitogenesis: a marriage of cellular and molecular biology
S. Schnell‚ PK Maini‚ D. McInerney‚ DJ Gavaghan and P. Houston
In Comptes Rendus Biologies. Vol. 325. No. 3. Pages 179–189. March, 2002.
Details about Models for pattern formation in somitogenesis: a marriage of cellular and molecular biology | BibTeX data for Models for pattern formation in somitogenesis: a marriage of cellular and molecular biology
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[93]
Microring electrodes: A computational study of transport−limited processes
BA Brookes‚ DJ Gavaghan and RG Compton
In The Journal of Physical Chemistry B. Vol. 106. No. 18. Pages 4886–4896. 2002.
Details about Microring electrodes: A computational study of transport−limited processes | BibTeX data for Microring electrodes: A computational study of transport−limited processes
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[94]
Variation of venous admixture‚ SF6 shunt‚ Pa−O2‚ and the Pa−O2/F−IO2 ratio with F−IO2
JP Whiteley‚ DJ Gavaghan and CEW Hahn
In British Journal Of Anaesthesia. Vol. 88. No. 6. Pages 771–778. June, 2002.
Details about Variation of venous admixture‚ SF6 shunt‚ Pa−O2‚ and the Pa−O2/F−IO2 ratio with F−IO2 | BibTeX data for Variation of venous admixture‚ SF6 shunt‚ Pa−O2‚ and the Pa−O2/F−IO2 ratio with F−IO2
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[95]
Finite element simulation of electrochemically reversible‚ quasi−reversible and irreversible linear sweep voltammetry at the wall tube electrode
OV Klymenko‚ DJ Gavaghan‚ KE Harriman and RG Compton
In Journal of Electroanalytical Chemistry. Vol. 531. No. 1. Pages 25–31. 2002.
Details about Finite element simulation of electrochemically reversible‚ quasi−reversible and irreversible linear sweep voltammetry at the wall tube electrode | BibTeX data for Finite element simulation of electrochemically reversible‚ quasi−reversible and irreversible linear sweep voltammetry at the wall tube electrode
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[96]
Pooling data for number needed to treat: no problems for apples
R. Andrew Moore‚ David J. Gavaghan‚ Jayne E. Edwards‚ Phillip Wiffen and Henry J. McQuay
In BMC Medical Research Methodology − Latest Articles. Vol. 2. 2002.
Details about Pooling data for number needed to treat: no problems for apples | BibTeX data for Pooling data for number needed to treat: no problems for apples
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[97]
comparison of sinusoidal‚ square wave‚ sawtooth‚ and staircase forms of transient ramped voltammetry when a reversible process is analysed in the frequency domain
DJ Gavaghan‚ D. Elton and AM Bond
In Journal of Electroanalytical Chemistry. Vol. 513. No. 2. Pages 73–86. 2001.
Details about comparison of sinusoidal‚ square wave‚ sawtooth‚ and staircase forms of transient ramped voltammetry when a reversible process is analysed in the frequency domain | BibTeX data for comparison of sinusoidal‚ square wave‚ sawtooth‚ and staircase forms of transient ramped voltammetry when a reversible process is analysed in the frequency domain
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[98]
effect of periodic modulation on the aperiodic current in linear−scan and cyclic voltammetries
DJ Gavaghan‚ JC Myland and KB Oldham
In Journal of Electroanalytical Chemistry. Vol. 516. No. 1. Pages 2–9. 2001.
Details about effect of periodic modulation on the aperiodic current in linear−scan and cyclic voltammetries | BibTeX data for effect of periodic modulation on the aperiodic current in linear−scan and cyclic voltammetries
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[99]
Numerical simulation of alternating current linear sweep voltammetry at microdisc electrodes
DJ Gavaghan‚ DM Elton and AM Bond
In Collection of Czechoslovak Chemical Communications. Vol. 66. No. 2. Pages 255–275. February, 2001.
Details about Numerical simulation of alternating current linear sweep voltammetry at microdisc electrodes | BibTeX data for Numerical simulation of alternating current linear sweep voltammetry at microdisc electrodes
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[100]
Modelling inert gas exchange in tissue and mixed−venous blood return to the lungs
JP Whiteley‚ DJ Gavaghan and CEW Hahn
In JOURNAL OF THEORETICAL BIOLOGY . Vol. 209. No. 4. Pages 431–443. 2001.
Details about Modelling inert gas exchange in tissue and mixed−venous blood return to the lungs | BibTeX data for Modelling inert gas exchange in tissue and mixed−venous blood return to the lungs
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[101]
Analysis of ramped square−wave voltammetry in the frequency domain
DJ Gavaghan‚ D. Elton‚ KB Oldham and AM Bond
In Journal of Electroanalytical Chemistry. Vol. 512. No. 1. Pages 1–15. 2001.
Details about Analysis of ramped square−wave voltammetry in the frequency domain | BibTeX data for Analysis of ramped square−wave voltammetry in the frequency domain
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[102]
tidal breathing model of the inert gas sinewave technique for inhomogeneous lungs
JP Whiteley‚ DJ Gavaghan and CEW Hahn
In Respiration Physiology. Vol. 124. No. 1. Pages 65–83. December, 2000.
Details about tidal breathing model of the inert gas sinewave technique for inhomogeneous lungs | BibTeX data for tidal breathing model of the inert gas sinewave technique for inhomogeneous lungs
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[103]
Adaptive finite element simulation of currents at microelectrodes to a guaranteed accuracy. Theory
K. Harriman‚ DJ Gavaghan‚ P. Houston and E. Suli
In Electrochemistry Communications. Vol. 2. No. 3. Pages 157–162. March, 2000.
Details about Adaptive finite element simulation of currents at microelectrodes to a guaranteed accuracy. Theory | BibTeX data for Adaptive finite element simulation of currents at microelectrodes to a guaranteed accuracy. Theory
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[104]
An evaluation of homogeneity tests in meta−analyses in pain using simulations of individual patient data
DJ Gavaghan‚ RA Moore and HJ McQuay
In Pain. Vol. 85. No. 3. Pages 415–424. April, 2000.
Details about An evaluation of homogeneity tests in meta−analyses in pain using simulations of individual patient data | BibTeX data for An evaluation of homogeneity tests in meta−analyses in pain using simulations of individual patient data
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[105]
Adaptive finite element simulation of currents at microelectrodes to a guaranteed accuracy. ECE and EC2E mechanisms at channel microband electrodes
K. Harriman‚ DJ Gavaghan‚ P. Houston‚ D. Kay and E. Suli
In Electrochemistry Communications. Vol. 2. No. 8. Pages 576–585. August, 2000.
Details about Adaptive finite element simulation of currents at microelectrodes to a guaranteed accuracy. ECE and EC2E mechanisms at channel microband electrodes | BibTeX data for Adaptive finite element simulation of currents at microelectrodes to a guaranteed accuracy. ECE and EC2E mechanisms at channel microband electrodes
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[106]
Extended electron transfer and the Frumkin correction
DJ Gavaghan and SW Feldberg
In Journal of Electroanalytical Chemistry. Vol. 491. No. 1. Pages 103–110. 2000.
Details about Extended electron transfer and the Frumkin correction | BibTeX data for Extended electron transfer and the Frumkin correction
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[107]
cell cycle model for somitogenesis: Mathematical formulation and numerical simulation
JR Collier‚ D. McInerney‚ S. Schnell‚ PK Maini‚ DJ Gavaghan‚ P. Houston and CD Stern
In Journal of theoretical biology. Vol. 207. No. 3. Pages 305–316. 2000.
Details about cell cycle model for somitogenesis: Mathematical formulation and numerical simulation | BibTeX data for cell cycle model for somitogenesis: Mathematical formulation and numerical simulation
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[108]
tidal breathing model for the multiple inert gas elimination technique
JP Whiteley‚ DJ Gavaghan and CEW Hahn
In JOURNAL OF APPLIED PHYSIOLOGY . Vol. 87. No. 1. Pages 161–169. July, 1999.
Details about tidal breathing model for the multiple inert gas elimination technique | BibTeX data for tidal breathing model for the multiple inert gas elimination technique
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[109]
Pulmonary blood flow measured by inspiratory inert gas concentration forcing oscillations
EM Williams‚ MC Sainsbury‚ L. Sutton‚ L. Xiong‚ AMS Black‚ JP Whiteley‚ DJ Gavaghan and CEW Hahn
In RESPIRATION PHYSIOLOGY . Vol. 113. No. 1. Pages 47–56. July, 1998.
Details about Pulmonary blood flow measured by inspiratory inert gas concentration forcing oscillations | BibTeX data for Pulmonary blood flow measured by inspiratory inert gas concentration forcing oscillations
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[110]
An exponentially expanding mesh ideally suited to the fast and efficient simulation of diffusion processes at microdisc electrodes. 3. Application to voltammetry
DJ Gavaghan
In Journal of Electroanalytical Chemistry. Vol. 456. No. 1. Pages 25–35. 1998.
Details about An exponentially expanding mesh ideally suited to the fast and efficient simulation of diffusion processes at microdisc electrodes. 3. Application to voltammetry | BibTeX data for An exponentially expanding mesh ideally suited to the fast and efficient simulation of diffusion processes at microdisc electrodes. 3. Application to voltammetry
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[111]
mathematical evaluation of the multiple breath nitrogen washout (MBNW) technique and the multiple inert gas elimination technique (MIGET)
JP Whiteley‚ DJ Gavaghan and CEW Hahn
In JOURNAL OF THEORETICAL BIOLOGY . Vol. 194. No. 4. Pages 517–539. 1998.
Details about mathematical evaluation of the multiple breath nitrogen washout (MBNW) technique and the multiple inert gas elimination technique (MIGET) | BibTeX data for mathematical evaluation of the multiple breath nitrogen washout (MBNW) technique and the multiple inert gas elimination technique (MIGET)
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[112]
How accurate is your two−dimensional numerical simulation? .1. An introduction
DJ Gavaghan
In Journal of Electroanalytical Chemistry. Vol. 420. No. 1. Pages 147–158. 1997.
Details about How accurate is your two−dimensional numerical simulation? .1. An introduction | BibTeX data for How accurate is your two−dimensional numerical simulation? .1. An introduction
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[113]
Deriving dichotomous outcome measures from continuous data in randomised controlled trials of analgesics: Verification from independent data
A. Moore‚ H. McQuay and DJ Gavaghan
In Pain. Vol. 69. No. 1. Pages 127–130. January, 1997.
Details about Deriving dichotomous outcome measures from continuous data in randomised controlled trials of analgesics: Verification from independent data | BibTeX data for Deriving dichotomous outcome measures from continuous data in randomised controlled trials of analgesics: Verification from independent data
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[114]
Analytical solution for the steady−state diffusion towards an inlaid disc microelectrode in a multi−layered medium
J. Galceran‚ J. Salvador‚ J. Puy‚ J. Cecilia and DJ Gavaghan
In Journal of Electroanalytical Chemistry. Vol. 440. No. 1. Pages 1–25. 1997.
Details about Analytical solution for the steady−state diffusion towards an inlaid disc microelectrode in a multi−layered medium | BibTeX data for Analytical solution for the steady−state diffusion towards an inlaid disc microelectrode in a multi−layered medium
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[115]
Assessing the quality of reports of randomized clinical trials: Is blinding necessary?
AR Jadad‚ RA Moore‚ D. Carroll‚ C. Jenkinson‚ DJM Reynolds‚ DJ Gavaghan and HJ McQuay
In Controlled Clinical Trials. Vol. 17. No. 1. Pages 1–12. February, 1996.
Details about Assessing the quality of reports of randomized clinical trials: Is blinding necessary? | BibTeX data for Assessing the quality of reports of randomized clinical trials: Is blinding necessary?
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[116]
Numerical simulation of the time−dependent current to membrane−covered oxygen sensors .4. Experimental verification that the switch−on transient is non−Cottrellian for microdisc electrodes
L. Sutton‚ DJ Gavaghan and CEW Hahn
In Journal of Electroanalytical Chemistry. Vol. 408. No. 1. Pages 21–31. 1996.
Details about Numerical simulation of the time−dependent current to membrane−covered oxygen sensors .4. Experimental verification that the switch−on transient is non−Cottrellian for microdisc electrodes | BibTeX data for Numerical simulation of the time−dependent current to membrane−covered oxygen sensors .4. Experimental verification that the switch−on transient is non−Cottrellian for microdisc electrodes
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[117]
tidal breathing model of the forced inspired inert gas sinewave technique
DJ Gavaghan and CEW Hahn
In Respiration Physiology. Vol. 106. No. 2. Pages 209–221. November, 1996.
Details about tidal breathing model of the forced inspired inert gas sinewave technique | BibTeX data for tidal breathing model of the forced inspired inert gas sinewave technique
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[118]
2−DIMENSIONAL IMPLEMENTATION OF THE FINITE−ELEMENT METHOD WITH SINGULARITY CORRECTION FOR DIFFUSION−LIMITED CURRENT AT AN UNSHIELDED DISC ELECTRODE
J. GALCERAN‚ DJ GAVAGHAN and JS ROLLETT
In Journal of Electroanalytical Chemistry. Vol. 394. No. 1. Pages 17–28. 1995.
Details about 2−DIMENSIONAL IMPLEMENTATION OF THE FINITE−ELEMENT METHOD WITH SINGULARITY CORRECTION FOR DIFFUSION−LIMITED CURRENT AT AN UNSHIELDED DISC ELECTRODE | BibTeX data for 2−DIMENSIONAL IMPLEMENTATION OF THE FINITE−ELEMENT METHOD WITH SINGULARITY CORRECTION FOR DIFFUSION−LIMITED CURRENT AT AN UNSHIELDED DISC ELECTRODE
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[119]
EFFECT OF METHYLENE−BLUE ON THE VASODILATOR ACTION OF INHALED NITRIC−OXIDE IN HYPOXIC SHEEP
JD YOUNG‚ OJ DYAR‚ L. XIONG‚ J. ZHANG and D. GAVAGHAN
In British Journal Of Anaesthesia. Vol. 73. No. 4. Pages 511–516. October, 1994.
Details about EFFECT OF METHYLENE−BLUE ON THE VASODILATOR ACTION OF INHALED NITRIC−OXIDE IN HYPOXIC SHEEP | BibTeX data for EFFECT OF METHYLENE−BLUE ON THE VASODILATOR ACTION OF INHALED NITRIC−OXIDE IN HYPOXIC SHEEP
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[120]
NUMERICAL−SIMULATION OF THE TIME−DEPENDENT CURRENT TO MEMBRANE−COVERED OXYGEN SENSORS .2. THE APPROACH TO THE STEADY−STATE AND THE RESPONSE TO A STEP CHANGE FOR A MICROCATHODE
DJ GAVAGHAN‚ JS ROLLETT and CEW HAHN
In Journal of Electroanalytical Chemistry. Vol. 348. No. 1. Pages 1–14. 1993.
Details about NUMERICAL−SIMULATION OF THE TIME−DEPENDENT CURRENT TO MEMBRANE−COVERED OXYGEN SENSORS .2. THE APPROACH TO THE STEADY−STATE AND THE RESPONSE TO A STEP CHANGE FOR A MICROCATHODE | BibTeX data for NUMERICAL−SIMULATION OF THE TIME−DEPENDENT CURRENT TO MEMBRANE−COVERED OXYGEN SENSORS .2. THE APPROACH TO THE STEADY−STATE AND THE RESPONSE TO A STEP CHANGE FOR A MICROCATHODE
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[121]
NUMERICAL−SIMULATION OF THE TIME−DEPENDENT CURRENT TO MEMBRANE−COVERED OXYGEN SENSORS .1. THE SWITCH−ON TRANSIENT
DJ GAVAGHAN‚ JS ROLLETT and CEW HAHN
In Journal of Electroanalytical Chemistry. Vol. 325. No. 1. Pages 23–44. 1992.
Details about NUMERICAL−SIMULATION OF THE TIME−DEPENDENT CURRENT TO MEMBRANE−COVERED OXYGEN SENSORS .1. THE SWITCH−ON TRANSIENT | BibTeX data for NUMERICAL−SIMULATION OF THE TIME−DEPENDENT CURRENT TO MEMBRANE−COVERED OXYGEN SENSORS .1. THE SWITCH−ON TRANSIENT
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[122]
CORRECTION OF BOUNDARY SINGULARITIES IN NUMERICAL−SIMULATION OF TIME−DEPENDENT DIFFUSION−PROCESSES AT UNSHIELDED DISK ELECTRODES
JS GAVAGHAN DJand ROLLETT
In Journal of Electroanalytical Chemistry. Vol. 295. No. 1. Pages 1–14. 1990.
Details about CORRECTION OF BOUNDARY SINGULARITIES IN NUMERICAL−SIMULATION OF TIME−DEPENDENT DIFFUSION−PROCESSES AT UNSHIELDED DISK ELECTRODES | BibTeX data for CORRECTION OF BOUNDARY SINGULARITIES IN NUMERICAL−SIMULATION OF TIME−DEPENDENT DIFFUSION−PROCESSES AT UNSHIELDED DISK ELECTRODES
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[123]
ORAL MORPHINE IN CANCER PAIN − INFLUENCES ON MORPHINE AND METABOLITE CONCENTRATION
HJ MCQUAY‚ D. CARROLL‚ CC FAURA‚ DJ GAVAGHAN‚ CW HAND and RA MOORE
In Clinical Pharmacology & Therapeutics. Vol. 48. No. 3. Pages 236–244. September, 1990.
Details about ORAL MORPHINE IN CANCER PAIN − INFLUENCES ON MORPHINE AND METABOLITE CONCENTRATION | BibTeX data for ORAL MORPHINE IN CANCER PAIN − INFLUENCES ON MORPHINE AND METABOLITE CONCENTRATION
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[124]
CORRECTION OF BOUNDARY SINGULARITIES IN NUMERICAL−SIMULATION OF TIME−DEPENDENT DIFFUSION−PROCESSES AT UNSHIELDED DISK ELECTRODES
DJ GAVAGHAN and JS ROLLETT
In Journal of Electroanalytical Chemistry. Vol. 295. No. 1. Pages 1–14. 1990.
Details about CORRECTION OF BOUNDARY SINGULARITIES IN NUMERICAL−SIMULATION OF TIME−DEPENDENT DIFFUSION−PROCESSES AT UNSHIELDED DISK ELECTRODES | BibTeX data for CORRECTION OF BOUNDARY SINGULARITIES IN NUMERICAL−SIMULATION OF TIME−DEPENDENT DIFFUSION−PROCESSES AT UNSHIELDED DISK ELECTRODES
Conference papers
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[1]
Evaluation of computational modelling as a preclinical proarrhythmic safety assay
G Mirams‚ K Beattie‚ Y Cui‚ C Luscombe‚ G Williams‚ D Gavaghan and N McMahon
Vol. 86. No. 1. Pages e21. 2013.
Details about Evaluation of computational modelling as a preclinical proarrhythmic safety assay | BibTeX data for Evaluation of computational modelling as a preclinical proarrhythmic safety assay | DOI (10.1016/j.vascn.2013.01.081)
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[2]
The Virtual Physiological Human ToolKit – Evolution and Sustainability
Jonathan Cooper‚ John Fenner‚ Keith McCormack‚ David Gavaghan and Peter Coveney
In Abstract booklet for VPH2010. Pages 39−41. September, 2010.
Details about The Virtual Physiological Human ToolKit – Evolution and Sustainability | BibTeX data for The Virtual Physiological Human ToolKit – Evolution and Sustainability | Link to The Virtual Physiological Human ToolKit – Evolution and Sustainability
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[3]
On the secure sharing and aggregation of data to support Systems Biology research
Andrew Simpson‚ Mark Slaymaker and David Gavaghan
In Proceedings of the 7th International Conference on Data Integration in the Life Sciences (DILS 2010). Pages 58–73. Springer−Verlag Lecture Notes in Computer Science‚ volume 6254. 2010.
Details about On the secure sharing and aggregation of data to support Systems Biology research | BibTeX data for On the secure sharing and aggregation of data to support Systems Biology research